PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G25220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 206aa    MW: 23021.7 Da    PI: 7.7859
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G25220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR35.81.6e-11644240
              TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                     e+ +C+C +s+C ++YC+Cf ++ +Cs++C+C++C N e
  OPUNC05G25220.1  6 ERPKCSCVQSSCTQLYCRCFRSRYFCSDNCNCTGCYNIE 44
                     5679*********************************76 PP

2TCR44.14.2e-14105143139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      k+ kgC+C kskC k+YCeCf++ + C+ +CkC +C+N+
  OPUNC05G25220.1 105 KHAKGCSCMKSKCSKLYCECFKNSVGCTARCKCRECSNS 143
                      589***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-6546IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.7286145IPR005172CRC domain
PfamPF036385.1E-9943IPR005172CRC domain
SMARTSM011142.5E-11105146IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.5E-11108143IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MANNQERPKC SCVQSSCTQL YCRCFRSRYF CSDNCNCTGC YNIEYYADAV EERSDMIQMK  60
DPNAFDPKIV VSVQDATAAD PQSSTSAVSD PKNTSDAMPG NKQRKHAKGC SCMKSKCSKL  120
YCECFKNSVG CTARCKCREC SNSFGVKKSE SSNKPDDKSA TDGLTHEETT TENITLPGET  180
WNSDPNKRPR YFVSFSPFNF ANIVYQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985989e-95AC098598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1007_H05, complete sequence.
GenBankAP0149619e-95AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126139e-95CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640257.11e-130PREDICTED: protein lin-54 homolog isoform X1
RefseqXP_015640258.11e-130PREDICTED: protein lin-54 homolog isoform X1
RefseqXP_015640259.11e-130PREDICTED: protein lin-54 homolog isoform X1
TrEMBLA0A0E0L6E11e-152A0A0E0L6E1_ORYPU; Uncharacterized protein
STRINGBGIOSGA020465-PA1e-130(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.13e-21Tesmin/TSO1-like CXC domain-containing protein